miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|18224856|gb|AV929059.1|AV929059 CCTGGGNAACTGGGGATAGACTCTAGGTTTTGGCTTTGCCGGCACCGGCAAATAATGTACTCCGCCACTTACAGTATGCT
CCCTCCGTCTCAAAATAAGTGTCTCAGCTTTATACTAGTTTTAGTATAAAGTTATACTAAGCTTGAAACATTTATTTTGA
GGCGGAGCGAGTATTAATCATGCACAGAAAATAAATTACATAGAGAGATAGCTATATTATATACACCACCGGACAAACTT
CAGGCGACGGTCTACCCAATACTTGTGATTCCGTTTTTCTCCCCCCTTCTTCCAGCTGCCATCATTTTCCCCAGCACCTT
GTTTCATTCACAAGCAATCTTGGTATCAAAACTGCTTAGACATATTGCAAATGATTGAAATGCTGATATCGGGTAGCGGT
AGTCCATGGTGAACAAGTCTTTGCCTATCTTTCCAAACTGGAGAATCACCTTGTCATGCTCCTGGCTAACTGGTCCATTG
TCATCTGAAGCCACCAGCTGAAAGTTCTTCACTGACGCAACCGTCACCCGCCCACGGAAATTGAGGCACCAACATTGCAG
TTGTTCATGCCACCGAGGAGACTTGTTCTTCAGCACCAGCTTCTCTTCGTCCTGAGCCTGAGCGGGTGCACTGTCTATCC
GAGCAGATTTAGATCTGAAGAATGGAATCGACGGGAAGGAGTCAAGGTTGCT




Most similar to sp|Q10LG8|TLP6_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa
           subsp. japonica GN=TULP6 PE=2 SV=1
          Length = 403

 Score =  225 bits (574), Expect = 2e-58
 Identities = 112/124 (90%), Positives = 115/124 (92%), Gaps = 2/124 (1%)
 Frame = -1

Query: 692 SNLDSFPSIPFFRSKSARIDSAPAQ--AQDEEKLVLKNKSPRWHEQLQCWCLNFRGRVTV 519
           S LDSFPSI FFRSKSARIDSA +Q   Q EEKLVLKNKSPRWHEQLQCWCLNFRGRVTV
Sbjct: 280 SGLDSFPSISFFRSKSARIDSATSQLSTQKEEKLVLKNKSPRWHEQLQCWCLNFRGRVTV 339

Query: 518 ASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKDLFTMDYRYPISAFQSFAICLSSFDTK 339
           ASVKNFQLVASD+NGP +QE DKVILQFGKIGKDLFTMDYRYPISAFQSFAICLSSFDTK
Sbjct: 340 ASVKNFQLVASDENGPTNQEQDKVILQFGKIGKDLFTMDYRYPISAFQSFAICLSSFDTK 399

Query: 338 IACE 327
           IACE
Sbjct: 400 IACE 403